What is a p-value? by Daniel Lakens

Daniel Lakens
16 Sept 201920:31
EducationalLearning
32 Likes 10 Comments

TLDRThis lecture clarifies the concept and interpretation of p-values in statistical analysis. It explains that p-values measure the surprise of the data given a null hypothesis and are not a measure of the hypothesis's truth. Misinterpretations are common, but understanding p-values as a long-term guide for decision-making, rather than a definitive statement about an effect, is crucial. The lecture also touches on Bayesian statistics as an alternative approach for making probabilistic statements about theories.

Takeaways
  • 💭 P-values offer a first line of defense against being fooled by randomness, helping to separate signal from noise in scientific data.
  • 💡 Misinterpretation of p-values is common, and understanding their correct meaning is crucial for scientific research.
  • 🧐 Bayesian statistics do not rely on p-values, presenting an alternative approach for those questioning the use of p-values.
  • 📈 P-values indicate how surprising data is under the assumption that there is no effect, rather than proving a hypothesis directly.
  • 👀 A common misunderstanding is to interpret p-values as the probability of a theory being true, which is incorrect.
  • 🚨 When a p-value is smaller than 0.05, it suggests the data is surprising enough to merit further investigation but does not confirm a theory.
  • 🤔 Larger than 0.05 p-values indicate data is not surprising, which could mean a true effect was not detected due to sample size limitations.
  • 📌 Using p-values correctly involves acting on the data in a way that limits false discoveries over the long run.
  • 🔍 P-value distributions vary: with a true effect, smaller p-values are more likely; without an effect, p-values are uniformly distributed.
  • 🏆 Repeated experiments and considering effect sizes alongside p-values are necessary for robust scientific conclusions.
Q & A
  • What is the primary purpose of p-values in scientific research?

    -The primary purpose of p-values is to serve as a statistical measure that helps differentiate between random variation (noise) and a true effect (signal) in data, offering a first line of defense against being fooled by randomness.

  • Why are p-values widely criticized?

    -P-values are widely criticized because they are often misinterpreted. People may mistakenly use them to make statements about the probability of a theory being true, rather than the probability of observing the data given the null hypothesis.

  • What is the formal definition of a p-value?

    -The formal definition of a p-value is the probability of obtaining the observed data or more extreme data, assuming the null hypothesis is true.

  • How can p-values be used correctly in the context of statistical analysis?

    -P-values can be used correctly by understanding them as a guide for behavior in the long run, using them in conjunction with other statistical measures like effect sizes, and by recognizing that they are not definitive proof of a hypothesis but rather an indication of how surprising the data is under the null hypothesis.

  • What is the relationship between p-values and Bayesian statistics?

    -P-values are not used in Bayesian statistics, which instead focuses on calculating the probability of a hypothesis given the observed data. Bayesian statistics provide a different approach to statistical inference that can be preferable for some researchers, but p-values remain a common tool in many scientific fields.

  • What does a p-value less than 0.05 typically indicate in the context of statistical significance?

    -A p-value less than 0.05 typically indicates that the observed data is statistically significant, meaning it is unlikely to have occurred by chance alone, assuming the null hypothesis is true. This suggests that there may be a true effect or difference worth further investigation.

  • How should one interpret a p-value that is greater than 0.05?

    -A p-value greater than 0.05 suggests that the observed data is not surprising under the null hypothesis, and therefore, it does not provide strong evidence for a true effect. However, it does not necessarily mean that there is no effect; it could be that the effect is small or the sample size is not large enough to detect it.

  • What is the concept of 'insert mu' in Zen Buddhism, and how does it relate to interpreting p-values greater than 0.05?

    -In Zen Buddhism, 'insert mu' is a concept where a question is negated when asked. It relates to interpreting p-values greater than 0.05 because, just as the Zen master negates the question with 'mu', we should not conclude the absence of an effect when we observe a non-significant p-value. Instead, we acknowledge the data's lack of statistical significance and remain open to further investigation.

  • What does a uniform distribution of p-values indicate in the absence of a true effect?

    -A uniform distribution of p-values in the absence of a true effect indicates that every p-value, regardless of its magnitude, is equally likely. This means that there is a 5% chance of obtaining a p-value less than 0.05 purely by chance, leading to a type 1 error.

  • How does statistical power affect the distribution of p-values?

    -Statistical power affects the distribution of p-values by influencing the likelihood of observing small p-values. Higher statistical power, which indicates a greater probability of detecting a true effect, results in a distribution where more p-values fall below the significance level of 0.05.

  • What is the significance of the 5 Sigma threshold in physics?

    -The 5 Sigma threshold in physics is used as a high standard for declaring a discovery. It corresponds to a p-value smaller than 0.0000003, indicating that there is only a 0.003% chance that the observed effect is due to random variation. This high threshold provides a strong level of confidence in the discovery.

  • Why is it important to consider multiple studies and not rely solely on p-values when evaluating a scientific hypothesis?

    -It is important to consider multiple studies because a single p-value can be influenced by random variation, and no single experiment can provide definitive proof of a phenomenon. Multiple studies, including replications, can provide stronger evidence and help to confirm the presence of a true effect, leading to a more robust scientific conclusion.

Outlines
00:00
🔍 Understanding P-Values in Research

This segment explains the significance and common misinterpretations of p-values in scientific research. P-values serve as a statistical tool to distinguish signal from noise, helping researchers avoid being misled by randomness in their data. Despite their widespread use, p-values are often misunderstood as statements about the probability of a hypothesis being true, rather than what they actually are: measures of how surprising the data is under the assumption that there is no effect. The narrative stresses the importance of correct interpretation and introduces Bayesian statistics as an alternative approach that does not rely on p-values. Through a practical example involving a study on phone use while driving, the concept of p-values is further elucidated, emphasizing that they indicate the likelihood of observing the given data if there was no real effect, rather than confirming the presence of an effect.

05:01
📊 Interpreting P-Values and Statistical Significance

This part delves deeper into the interpretation of p-values, especially in terms of statistical significance and the common threshold of 0.05 (or 5% significance level). It clarifies that p-values less than 0.05 indicate data that is surprising enough to warrant further investigation under the null hypothesis of no effect. The narrative explains the formal definition of a p-value as the probability of observing data as extreme as, or more extreme than, what was actually observed, assuming the null hypothesis is true. It also addresses a common misconception that a p-value reflects the probability of a theory being true, using an example from quantum physics to highlight how even experts can misinterpret p-values. The section concludes with a discussion on how to properly report and interpret p-values in research findings, emphasizing statements about the data rather than the theory being tested.

10:05
🤔 When P-Values Exceed the Significance Threshold

This section explores scenarios where p-values are greater than 0.05, suggesting that the observed data is not statistically surprising under the null hypothesis. It introduces the concept of 'mu' from Zen Buddhism as a metaphor for the indeterminate nature of such findings, emphasizing that a high p-value does not necessarily imply the absence of an effect, but rather that the data does not strongly support one. The segment underscores the importance of using p-values as a guide for long-term research behavior rather than definitive proof, explaining how they should inform researchers' actions and interpretations over time. It also touches on the emotional aspect of research when findings do not reach statistical significance, encouraging persistence and reconsideration of study design or effect size expectations.

15:06
🚀 Navigating Research with P-Values

This concluding part offers guidance on how to navigate the research process using p-values, advocating for a nuanced and informed approach. It stresses the importance of discretion in interpreting statistical tests and the need to consider p-values in the context of broader research findings, including effect sizes and replicability. The narrative revisits the advice of statisticians like Neyman, Pearson, and Fisher on the role of p-values in research, highlighting that no single p-value should be taken as conclusive evidence of an effect but rather as an indicator for further exploration. The section also illustrates how p-values are distributed across studies with true effects versus no effect, emphasizing the uniform distribution of p-values under the null hypothesis and how this influences the interpretation of statistical significance and type I error rates.

Mindmap
Keywords
💡p-values
p-values are statistical measures used to determine the probability of observing the data given that the null hypothesis is true. They are a key concept in hypothesis testing and are used to assess whether the results of a study are due to chance or reflect an actual effect. In the video, it is emphasized that p-values should not be misinterpreted as the probability of a theory being true, but rather as a measure of how surprising the observed data is under the assumption of no effect.
💡statistical tests
Statistical tests are methods used to make inferences about populations based on samples. They involve calculating a test statistic from sample data and comparing it to a distribution to determine if the observed results are likely due to random chance or reflect a real phenomenon. The video script explains that p-values are one type of output from statistical tests, and it is crucial to understand their proper interpretation to avoid incorrect conclusions.
💡null hypothesis
The null hypothesis is a statistical假设 that there is no effect or no difference between groups being studied. It serves as a baseline against which alternative hypotheses are tested. In the context of the video, the null hypothesis is the assumption that there is no effect, and p-values measure how surprising the data would be if this null hypothesis were true.
💡Bayesian statistics
Bayesian statistics is a framework for updating probabilities for hypotheses as more evidence or data becomes available. Unlike frequentist statistics, which uses p-values, Bayesian statistics directly incorporates prior knowledge and updates beliefs based on new data. The video mentions Bayesian statistics as an alternative to p-values that some researchers prefer, especially when p-values are not well understood.
💡Type 1 error
A Type 1 error occurs when a true null hypothesis is incorrectly rejected, leading to a false positive result. This is akin to concluding that there is an effect when there is actually none. The video explains that the p-value, when set at 0.05, is used to control the rate of Type 1 errors, ensuring that such errors occur no more than 5% of the time in the long run.
💡statistical power
Statistical power refers to the probability that a study will correctly reject a false null hypothesis, i.e., detect a true effect when there is one. Higher power means a higher likelihood of finding an effect if it exists. The video discusses how the distribution of p-values changes with different levels of statistical power, showing that with higher power, more p-values fall below the significance level, indicating a true effect.
💡effect size
Effect size is a measure that quantifies the magnitude of a phenomenon or the strength of the relationship between variables. It is an important complement to p-values because it provides information about the practical significance of a finding, not just its statistical significance. The video encourages considering effect sizes alongside p-values for a more comprehensive understanding of research findings.
💡meta-analysis
Meta-analysis is a statistical technique that combines the results of multiple studies to estimate the overall effect of a phenomenon. It increases the sample size and statistical power, providing a more reliable estimate of the true effect. The video mentions meta-analysis as a method to consider when interpreting p-values, suggesting that it can help in understanding the consistency of findings across different studies.
💡Zen Buddhism
Zen Buddhism is a school of Mahayana Buddhism that emphasizes the practice of meditation and mindfulness. The video uses the concept of 'mu' from Zen Buddhism to illustrate the idea of not being able to answer a question with a simple yes or no, similar to how a p-value larger than 0.05 cannot definitively answer the question of an effect's existence.
💡Higgs boson
The Higgs boson, also known as the 'God particle,' is a fundamental particle in the Standard Model of particle physics. Its discovery was announced with a high level of statistical significance, using the 5-sigma standard, which corresponds to a p-value much smaller than 0.05. The video uses this example to illustrate how high significance levels can be used to confidently claim a discovery, despite the rare possibility of a false positive.
💡degenerative research line
A degenerative research line refers to a series of studies that fail to confirm a predicted effect or hypothesis. When a non-significant result is observed, it may lead to a reevaluation or abandonment of the initial hypothesis. The video suggests that such a situation requires explanation and may lead to a shift in研究方向 or the development of new hypotheses.
Highlights

P-values offer a first line of defense against being fooled by randomness, helping to separate signal from noise in data interpretation.

Misinterpretation of P-values is common, underscoring the importance of understanding their correct usage in scientific research.

P-values measure how surprising data is under the assumption of no effect, aiding in the evaluation of hypothesis validity.

Bayesian statistics offer an alternative to P-values, providing direct probabilities of theories rather than just data.

Using a practical example, the importance of designing studies to accurately measure effects, such as the impact of calling while driving on accident risk, is highlighted.

The significance of observed data differences and the role of P-values in distinguishing between random noise and real differences.

Critical values in P-value interpretation and the concept of data falling within or beyond expected ranges under the null hypothesis.

Formal definition of P-values as the probability of observing the current or more extreme data, assuming the null hypothesis is true.

Common misinterpretations of P-values, including confusing them with the probability of a theory being true, are clarified.

The misuse of P-values in quantum physics research highlights the widespread nature of misinterpretation across scientific disciplines.

The limited implication of non-significant P-values, which cannot conclusively prove the absence of an effect.

The concept of 'mu' from Zen Buddhism is used as an analogy for the indeterminate nature of results when P-values are larger than 0.05.

The role of P-values as a behavioral guide in scientific research, emphasizing their utility in the long run rather than in individual studies.

The use of stringent P-value thresholds in physics, such as the 5 Sigma rule for the discovery of the Higgs boson, illustrates discipline-specific standards.

The importance of considering effect sizes, additional studies, and the broader research context when interpreting P-values.

The distribution of P-values in studies with true effects versus those with no effects, highlighting the variability and interpretation challenges.

Transcripts
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